rs27348217 SNP Detail

Summary

• ID
  rs27348217
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164296772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC AGGAAATGTC CCTTCTCAAA
  Y
  GTGTGCACAC ACATAGCCCT TAATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37517352	NES08888300	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	C		T	C	C	C		T	T	C	C		T
ss45315052	mCV22942105	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		C
ss148225159	ENSMUSSNP5133223	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
ss320605961	CHEV_2_164280352	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27348217					SNP	T	T	T	T	T	T	C	T	T	C	C	C	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517352	NES08888300	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164296772 () rs orientation: forward

Symbol	Name	Function Class
Rr397476	regulatory region 397476	1973 bp upstream
Rr569621	regulatory region 569621	1176 bp distal
Rr569622	regulatory region 569622	within coordinates
Rr569623	regulatory region 569623	1634 bp proximal