rs27349879 SNP Detail

Summary

• ID
  rs27349879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152651527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACA TTTTGTTGGC CCATCTACAG
  Y
  GCTGGCCTTA GCTTAGAACT TAGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37561604	NES08926270	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T		T	T	T	T		T	T	T	T		T
ss45324357	mCV27575697	ABI	CRAMUS_MOUSE	f	SNP		T					C		T
ss147974826	ENSMUSSNP5600317	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss320563507	CHEV_2_152635343	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27349879					SNP	T	T	C	T	C	T	C	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561604	NES08926270	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152651527 () rs orientation: forward

Symbol	Name	Function Class
A630035D09Rik	RIKEN cDNA A630035D09 gene	within coordinates
Bcl2l1	BCL2-like 1	within coordinates
Rr374093	regulatory region 374093	within coordinates
Rr567478	regulatory region 567478	866 bp distal
Rr567479	regulatory region 567479	544 bp proximal
Tssr20835	transcription start site region 20835	861 bp upstream