rs27349905 SNP Detail

Summary

• ID
  rs27349905
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152636744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCACAAGC TCTTGAAGAT
  CCTATCCCTT CCCTACCCGA TGGGTCTCTG AGAACATGGC TGCAGGTGCA GGGCAAAGCC
  AGAATTGCTG TAACTGCCAG GCCAGCAGTG CCTGACCTAC ATCTCCATGC TTGGTTGCAT
  GAAAGAAAAT ACAAGGGCTT TCCGTTAGTG CTCACTAGAT GCAGCTGGTT CAGGGAAGCC
  Y
  GAGTTTTTTG AAGGCCTGTC AAGAGTAGGG CAAGTATGAT CTGGCTTTGG GGACCTCTAT
  AGATTTCAGA GATTAGAATC TTCCTTTTAC CAAGGTCCCC ACTGAAGCTT TCTTCTTTTT
  CTAATATATT ATCCTTATTA AGAAAACAAC ACACACAGAG GAGAGAGAGA ATATGCACAA
  TTGCTCAGTG ATTCATTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37561630	NES08926972	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C		C	C	T	T	T	T	T	C
ss45360247	mCV27575593	ABI	CRAMUS_MOUSE	f	SNP	C	T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27349905					SNP	C	T	C	C	C	C	C	C	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561630	NES08926972	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152636744 () rs orientation: forward

Symbol	Name	Function Class
Bcl2l1	BCL2-like 1	within coordinates
Rr367333	regulatory region 367333	within coordinates
Rr374092	regulatory region 374092	1397 bp downstream
Rr567472	regulatory region 567472	1882 bp distal
Rr567473	regulatory region 567473	902 bp distal
Rr567474	regulatory region 567474	within coordinates