rs27349909 SNP Detail

Summary

• ID
  rs27349909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152636158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATAAATA ATCACTAGCA
  GAGCCAGTTG TGGTGGCACA TGAATTTAAT CCTAGTACCT AGGCAGAGGT AAGTGGATTT
  CTGTGAGTTC AAGGCCAAGC ATTGCCCCCA GAATGCAGCT AAAGAAAGAA GTGGTCTTGG
  GGAAGGTGTG GCTAGGCGAG TAACAGAGCC AGAAAAGCTA TCCCAGTGCC AGGCACAGAG
  Y
  TGGCAGTTCT ATAGAGAACA AAGACCAGAG TGTGCCAGGC TTGAGGGGCC TAGTGAAGCA
  GCATCGTGGG GGACGGGCAC GCACAAACGT GTAGGTGAGG TCCATGGAGA TCAGACAGCT
  GAGAGCAGAA ATGAAAACAG GCTGGGTCCC AAAGGGCAGC AGCTTCAGCT CTGTAAACAC
  CAGCCAAGCG GAGGAAGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37561634	NES08926966	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T		C	T	T	C	C	C	C	C	T
ss45306889	mCV27575591	ABI	CRAMUS_MOUSE	f	SNP		T	C					T
ss147974682	ENSMUSSNP2873285	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27349909					SNP	T	T	C	T	T	T	T	T	C	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561634	NES08926966	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152636158 () rs orientation: forward

Symbol	Name	Function Class
Bcl2l1	BCL2-like 1	within coordinates
Rr367333	regulatory region 367333	203 bp upstream
Rr374092	regulatory region 374092	811 bp downstream
Rr567472	regulatory region 567472	1296 bp distal
Rr567473	regulatory region 567473	316 bp distal
Rr567474	regulatory region 567474	within coordinates
Tssr26859	transcription start site region 26859	1653 bp upstream