rs27349915 SNP Detail

Summary

• ID
  rs27349915
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152635066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACTGAAAT CCAGGTACTT GCCCAACGAC CACCAGCTAT
  AAGTCAAAGC CTGGTCTTAG GCCTCCTGAC TCCTGGGGCA AAGACTGCTA AGCCTGATGT
  Y
  CTAGGGTACA GGAACAGCTG CACCCATTCC ACAGGCATGG CAGCAGAATC AAATGGCCCA
  CAGTATATGC CCAATAAATA TTTTGATTCC AGCTAAAGAT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37561640	NES08926990	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27349915					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561640	NES08926990	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152635066 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l1	BCL2-like 1			Intron
				Noncoding-Transcript-Variant
Rr367333	regulatory region 367333			1295 bp upstream
Rr374092	regulatory region 374092			within coordinates
Rr567472	regulatory region 567472			204 bp distal
Rr567473	regulatory region 567473			396 bp proximal
Rr567474	regulatory region 567474			1060 bp proximal
Tssr26859	transcription start site region 26859			561 bp upstream