rs27350466 SNP Detail

Summary

• ID
  rs27350466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150969011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCGGCCAT ACTGTAGGAT
  CTTTAAACCT CGTTTTCTCT ACTATATTGC CAATATTCAA TTTTCTCTCA TGTATAAACA
  AATTCCCTTC TTCCTAGAAC CTAAACAACT GTGCAATTGA CACACCTGGA ATTCTGGATA
  ACCTTGGAAT ACAAATGGGG ACACGAACCT CCTCCACTGG GAAAACTGAA GCTCACTGTG
  Y
  TGTGTGCTCA CTGCAAACTC AAGTTGGACT GTCTTTCTAC CCGAAATGAT GACTTTATTC
  TTTCCTGTAT TGCATGTAGG TAGGAGAAAG GGGCCTTCCA TGTCTTTCTA CCTGAAATGA
  TGACTTTATT CTTTCCTGTA TTGCATGTAG GTAGGAGAAA GGGGCCTTCC ATGTTTTTAA
  TCCCCGTTGA TGTTGGGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37566585	NES08911308	PERLEGEN	MM_PANEL2	f	SNP		T		C	T	T	T	T	C	C	C
ss46436209	mCV23297101	ABI	CRAMUS_MOUSE	f	SNP	C		T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27350466					SNP	C	T	T	C	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37566585	NES08911308	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150969011 () rs orientation: forward

Symbol	Name	Function Class
Gm30478	predicted gene, 30478	373 bp upstream
Tssr20714	transcription start site region 20714	368 bp upstream
Tssr20715	transcription start site region 20715	389 bp upstream