rs27350542 SNP Detail

Summary

• ID
  rs27350542
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150883399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATGGACA CATGGATCTT
  AGAGACATGG GTCAGGTCTT CGCCTTCTTC TAATGTGCGT ATAGAATCTT GTTTCAGTCA
  GTGAAAAATC TAACCCTAGA CAAGCTATTG CAGTCTATGT AATCAATCCT AACAGAGGTT
  TGTCTGTCTT TGGGATACCA TGCATTGGTT GGTATTTCAA GATTGGTCTT CACAGCCTGG
  R
  TTCCTTCTGA ACTTACATGA CTAGAACCCT GATGTTTTCC TATGGAATTT TAAGGCACTG
  AGATGTACAT ATATATGTGC ATATAGATAT GTCAGTCTTT ACTGAACTCT TAAGGGTAGA
  CTTGGCGGGA CGAGAGAAAG ATACAGCTAA TGAATATTTA AAAAGTTCTG GGTAGCTTTT
  ATTTATTGTC AGCCTTAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37566663	NES08912474	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A	A	A	G	G	G
ss45199048	mCV22554928	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss147953202	ENSMUSSNP17345	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27350542					SNP	G	G	A	A	A	A	A	A	G	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37566663	NES08912474	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150883399 () rs orientation: forward

Symbol	Name	Function Class
A130094D17Rik	RIKEN cDNA A130094D17 gene	1095 bp downstream
Cpgi12417	CpG island 12417	1603 bp distal
Rr397387	regulatory region 397387	1863 bp downstream
Rr567148	regulatory region 567148	1333 bp distal
Tssr20713	transcription start site region 20713	1962 bp downstream