rs27350545 SNP Detail

Summary

• ID
  rs27350545
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150883071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAAGATGC TTAGCTCTGT
  ACAGAAAAAA AAAAAAAAAA AAAAAAAGCT CCCATAACCT GAGGTACACA AGTCACAGAT
  GGGTTTCTGA TGCTCAGTAG AAAGAGATGA ATGGCAGACT ACCTATAGTT TTTGTATTTT
  ATGGAGCAGA GTCAGAGTTG ATGACTTTCC CAAAAGTGTT CCTCCTTTAA TAGACTACCC
  K
  CACCGATGCA GTGGTGGTGA AACAGTTGTG TGCACTTAGG CTAGCAGTCA GCCAAAATTA
  TGAATGCAAT ATTTGTAATT GCTTTTTGTA GTTGTGTCAA ATATCATAAT AGATATACAA
  TAAGCTTCTG ATGGACACAT GGATCTTAGA GACATGGGTC AGGTCTTCGC CTTCTTCTAA
  TGTGCGTATA GAATCTTGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37566666	NES08912469	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27350545					SNP	T	T	T	T	T	T	T	T	T	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37566666	NES08912469	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150883071 () rs orientation: forward

Symbol	Name	Function Class
A130094D17Rik	RIKEN cDNA A130094D17 gene	767 bp downstream
Cpgi12417	CpG island 12417	1275 bp distal
Nanp	N-acetylneuraminic acid phosphatase	1772 bp upstream
Rr397387	regulatory region 397387	1535 bp downstream
Rr567146	regulatory region 567146	1764 bp distal
Rr567147	regulatory region 567147	1682 bp distal
Rr567148	regulatory region 567148	1005 bp distal
Tssr20713	transcription start site region 20713	1634 bp downstream
Tssr26734	transcription start site region 26734	1748 bp upstream