rs27350548 SNP Detail

Summary

• ID
  rs27350548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150882719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCTGTTC ATAGTGAACT
  GTACCCTACC TGGGTAATAT ATACAAATTG TGAAAAAATG GCTGGGCCTC CAGCCAGTCA
  GGCCCAAACC GCCAAAACTA TGTAAGGTAA AGGCTGACTT CAGCCAGTCA TATTGTTCTT
  GTCTTTTCAT TGGCTACAAA TTTAACTTTG AGCTGTATTG TGTTCATAAG GAACTTGTTG
  R
  CCCACCTTTG CTTGGCTGTA AAACTTCCTG TGTTTTGAGA TAAACTTAAC TCCTTTTGGG
  TGTTTAATAA TTGGAATGCA GCATCCTTGA GTCTATGTAG TATACTTCTG CTTTTGCCTG
  ACAGTGACAG AGTTGTATAA CTTGACTAAA GACTAAGATG CTTAGCTCTG TACAGAAAAA
  AAAAAAAAAA AAAAAAAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37566669	NES08912461	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		A	G	G	G	A	A	A	A
ss45375706	mCV22554918	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27350548					SNP	A	A	G	G	G	G	G	G	A	G	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37566669	NES08912461	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150882719 () rs orientation: forward

Symbol	Name	Function Class
A130094D17Rik	RIKEN cDNA A130094D17 gene	415 bp downstream
Cpgi12417	CpG island 12417	923 bp distal
Nanp	N-acetylneuraminic acid phosphatase	1420 bp upstream
Rr397387	regulatory region 397387	1183 bp downstream
Tssr20713	transcription start site region 20713	1282 bp downstream
Tssr26734	transcription start site region 26734	1396 bp upstream