rs27350550 SNP Detail

Summary

• ID
  rs27350550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150882608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTCCCT CTGTCTCCCA
  AGTGCTAGTT CTCCCAAGTA CCACCACATC TGGCTTGAAT TAACTTCAAC TAAGATCTTT
  GTCTATACTT GAATGATACT GGCTCCAAGT GGCTTCTGTT CATAGTGAAC TGTACCCTAC
  CTGGGTAATA TATACAAATT GTGAAAAAAT GGCTGGGCCT CCAGCCAGTC AGGCCCAAAC
  Y
  GCCAAAACTA TGTAAGGTAA AGGCTGACTT CAGCCAGTCA TATTGTTCTT GTCTTTTCAT
  TGGCTACAAA TTTAACTTTG AGCTGTATTG TGTTCATAAG GAACTTGTTG GCCCACCTTT
  GCTTGGCTGT AAAACTTCCT GTGTTTTGAG ATAAACTTAA CTCCTTTTGG GTGTTTAATA
  ATTGGAATGC AGCATCCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37566671	NES08912457	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27350550					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37566671	NES08912457	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150882608 () rs orientation: forward

Symbol	Name	Function Class
A130094D17Rik	RIKEN cDNA A130094D17 gene	304 bp downstream
Cpgi12417	CpG island 12417	812 bp distal
Nanp	N-acetylneuraminic acid phosphatase	1309 bp upstream
Rr397387	regulatory region 397387	1072 bp downstream
Rr567146	regulatory region 567146	1301 bp distal
Rr567147	regulatory region 567147	1219 bp distal
Rr567148	regulatory region 567148	542 bp distal
Tssr20713	transcription start site region 20713	1171 bp downstream
Tssr26734	transcription start site region 26734	1285 bp upstream