rs27350554 SNP Detail

Summary

• ID
  rs27350554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150881776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCGCACAG TCTCCATCAG
  GAGATGGGGC AGGAGAGTGT GCCCACCAAC CTCGGAACCT AGCTGCCCGG TGACTTTAGC
  GCTTCACTTC TTGCCCACAG CCTTGTAGGA ACTAGAGCCT TCATCTGAAC ATCCTTTGAA
  AGATGCTTAG AAGAACTGAA GAGAAATGGG AGTCTCTGCA GTGTCTGCCG AATGGTTGTT
  Y
  TTAAAAATGT GTATTTGTGT TTCTGTGTAC GTGAGTGCCT GCAGAGGACA GACGAGGTCG
  TCCTGGAGCT GCAGTTGCGG CGGCTGTGAG CTGCCCACTG TGGGTGCTGG GAACTTGGGT
  CCTCTACAAG AGCAGTATGA GTTCTTAACC AGTGAACCAT TTCTCCAGCT CCTTTCCCTC
  CATCTTTACT CATTTTTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37566675	NES08912579	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27350554					SNP	C	C	C	C	C	C	C	C	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37566675	NES08912579	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150881776 () rs orientation: forward

Symbol	Name	Function Class
A130094D17Rik	RIKEN cDNA A130094D17 gene	within coordinates
Cpgi12417	CpG island 12417	within coordinates
Nanp	N-acetylneuraminic acid phosphatase	477 bp upstream
Rr397387	regulatory region 397387	240 bp downstream
Tssr20713	transcription start site region 20713	339 bp downstream
Tssr26734	transcription start site region 26734	453 bp upstream