rs27350559 SNP Detail

Summary

• ID
  rs27350559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150881279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCACGCAG CGGGGGGACT
  GAGGGTGCGG AGCGGAGTGC TGGCCCGGCA GGGGAGGGCG ACGGCGCGGG GACGTTACCT
  CCAACATGCC TCTCCTGCTC GCCCCGGCCG TGTCGATGAG TGTGTTGTCC AGGTCAAAGA
  AGACCGCGCG GACCCGACTC AGCCCCATAG CCTCGGCAAC CCAAGCAGCG CGCGAGCCGC
  Y
  TCTGCCGCGC CGCGCATGCG CAAGGCGGTC AGGAACACCT GGGCGGAGTC TCGGAGGTCA
  CCTGACCCTT CCAAAGCTCC GGGGTCTCCG TGGCAAGATC GCGCGAGATT CGGACACTAA
  ATTTTATAGG GTGCGCGTGC ACGAGAGGTG GATGAGTGTT ATCAAGGCTT ACTGCTGTGT
  GTGGGTGGAT GGTCCTCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37566680	NES08912574	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27350559					SNP	T	T	T	T	T	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37566680	NES08912574	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150881279 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A130094D17Rik	RIKEN cDNA A130094D17 gene			100 bp upstream
Cpgi12417	CpG island 12417			within coordinates
Nanp	N-acetylneuraminic acid phosphatase			mRNA-UTR
				Noncoding-Transcript-Variant
Rr397387	regulatory region 397387			within coordinates
Rr567146	regulatory region 567146			within coordinates
Rr567147	regulatory region 567147			29 bp proximal
Rr567148	regulatory region 567148			111 bp proximal
Tssr20713	transcription start site region 20713			142 bp upstream
Tssr26734	transcription start site region 26734			4 bp downstream