rs27350563 SNP Detail

Summary

• ID
  rs27350563
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150879992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTACCTG ACAGTGTTAT
  GCAGACTAAT GCTCAAATTT ACGAGGATCT GAGGCTAGGC ATAGACAGGG GGTCTGCTGA
  GGCACCGAGT ACTGGGAGAA TTGTGATTCA AATGTGAGGT TTAATAGACC TACTTAACAA
  GAACCAGCCT AACACAAAAC CTGAGTCTCA AAACACGGGC CTCAGCTGGA TAAGAGCACC
  K
  GTTGAGTGTG CCCTGTCTGC AGTCTGAGAT AATGGAGGCA GAACACACGG AAGTATGTAA
  CGTGTGAGGG TGTCACAATG CACGGGGCAA TCGACAGCGT GGAAATCTTC AGTTAAGACT
  GATTCCAAGT GTGGGGAGAA GTAGCTCAGG GGAGAACCTG TCTCGGATGG CGAGGAGGTA
  GGCTCAAACC TCAGAACCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37566684	NES08912569	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27350563					SNP	T	T	T	T	T	T	G	T	T	T	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37566684	NES08912569	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150879992 () rs orientation: forward

Symbol	Name	Function Class
A130094D17Rik	RIKEN cDNA A130094D17 gene	1387 bp upstream
Cpgi12417	CpG island 12417	777 bp proximal
Nanp	N-acetylneuraminic acid phosphatase	within coordinates
Rr397387	regulatory region 397387	1243 bp upstream
Rr567145	regulatory region 567145	883 bp distal
Rr567146	regulatory region 567146	within coordinates
Rr567147	regulatory region 567147	1316 bp proximal
Rr567148	regulatory region 567148	1398 bp proximal
Tssr20713	transcription start site region 20713	1429 bp upstream
Tssr26734	transcription start site region 26734	1291 bp downstream