rs27350564 SNP Detail

Summary

• ID
  rs27350564
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150879956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCTGGATG GTACAATCTT
  CCCATGTATG GCATGAAAGC TACCTGACAG TGTTATGCAG ACTAATGCTC AAATTTACGA
  GGATCTGAGG CTAGGCATAG ACAGGGGGTC TGCTGAGGCA CCGAGTACTG GGAGAATTGT
  GATTCAAATG TGAGGTTTAA TAGACCTACT TAACAAGAAC CAGCCTAACA CAAAACCTGA
  S
  TCTCAAAACA CGGGCCTCAG CTGGATAAGA GCACCTGTTG AGTGTGCCCT GTCTGCAGTC
  TGAGATAATG GAGGCAGAAC ACACGGAAGT ATGTAACGTG TGAGGGTGTC ACAATGCACG
  GGGCAATCGA CAGCGTGGAA ATCTTCAGTT AAGACTGATT CCAAGTGTGG GGAGAAGTAG
  CTCAGGGGAG AACCTGTCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37566685	NES08912567	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G	G		G	G	G	G	G	G	G	G	C
ss45301478	mCV22554710	ABI	CRAMUS_MOUSE	f	SNP	C	C	G					G		G
ss147953159	ENSMUSSNP4936197	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27350564					SNP	C	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37566685	NES08912567	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150879956 () rs orientation: forward

Symbol	Name	Function Class
A130094D17Rik	RIKEN cDNA A130094D17 gene	1423 bp upstream
Cpgi12417	CpG island 12417	813 bp proximal
Nanp	N-acetylneuraminic acid phosphatase	within coordinates
Rr397387	regulatory region 397387	1279 bp upstream
Rr567145	regulatory region 567145	847 bp distal
Rr567146	regulatory region 567146	within coordinates
Rr567147	regulatory region 567147	1352 bp proximal
Rr567148	regulatory region 567148	1434 bp proximal
Tssr20713	transcription start site region 20713	1465 bp upstream
Tssr26734	transcription start site region 26734	1327 bp downstream