rs27350565 SNP Detail

Summary

• ID
  rs27350565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150879798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCACTGT GGCAGGGATA
  TGAAAGATGA ATTGGATGTG GTCAGCCTGG AGATAAGACT ACAGCAAAAA TTTACATTGG
  ATGAGCCTTT TTGTCATTAA GGGGAGAATA AGCGAGACTG GGAGACAAGA GTGGATGGGG
  ACGCAGTTCA CTGAATGAGC GCTGGATGGT ACAATCTTCC CATGTATGGC ATGAAAGCTA
  Y
  CTGACAGTGT TATGCAGACT AATGCTCAAA TTTACGAGGA TCTGAGGCTA GGCATAGACA
  GGGGGTCTGC TGAGGCACCG AGTACTGGGA GAATTGTGAT TCAAATGTGA GGTTTAATAG
  ACCTACTTAA CAAGAACCAG CCTAACACAA AACCTGAGTC TCAAAACACG GGCCTCAGCT
  GGATAAGAGC ACCTGTTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37566686	NES08912565	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27350565					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37566686	NES08912565	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150879798 () rs orientation: forward

Symbol	Name	Function Class
A130094D17Rik	RIKEN cDNA A130094D17 gene	1581 bp upstream
Cpgi12417	CpG island 12417	971 bp proximal
Nanp	N-acetylneuraminic acid phosphatase	within coordinates
Rr397387	regulatory region 397387	1437 bp upstream
Tssr20713	transcription start site region 20713	1623 bp upstream
Tssr26734	transcription start site region 26734	1485 bp downstream