rs27352088 SNP Detail

Summary

• ID
  rs27352088
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150591606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGCAGCA GGGGTCTCTG
  CCCGAGTGTA GCCCACAGCC CTGCCGCGTC CATTCATTCT GCTGGCTTGT GCTGACCCGC
  CCCCAGCAGA ACCAGGCCCA GGCGCCTCCC CTTCTGCACT GGATAGCCCA ACTGGGAGGC
  TCAGGAAACC GGGGAAACCC TGTGTTCTGA TTGTGTGGAA GGTGGGAACG GTGGTGACAT
  S
  GAAGAACTTA CCAGGGGTCA GGGTGGTTCC ACCTGAGTTG GTGTGTGGCC ACAGGTGCTT
  CAGGTTAAAG GAGAGAGAAA GGTCCAGATG TAGACACCCA GAATGTAGGA CAGGGAGTCA
  GTGAGAACAC ATTTTTATTT TAAAAGCATC AGGAAGTAAT TGGTTTTGAG ACAACATTGC
  TGAGTAGGTC ACAGTGGACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37568407	NES08920177	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27352088					SNP	G	G	G	G	G	G	C	G	G	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568407	NES08920177	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150591606 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12411	CpG island 12411			103 bp distal
Entpd6	ectonucleoside triphosphate diphosphohydrolase 6			Intron
				Noncoding-Transcript-Variant
Gm74654	predicted gene, 74654			within coordinates
Rr397383	regulatory region 397383			587 bp downstream
Rr567087	regulatory region 567087			634 bp distal
Rr567088	regulatory region 567088			within coordinates
Rr567089	regulatory region 567089			112 bp proximal
Rr567090	regulatory region 567090			929 bp proximal
Rr567091	regulatory region 567091			1080 bp proximal
Tssr20707	transcription start site region 20707			539 bp downstream