rs27352095 SNP Detail

Summary

• ID
  rs27352095
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150590622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCCTCCA GGAACAAGAC
  CAGTGTCCTG CACCCCAATG TATAGATGCC ATCACGTGGG CAGGAAGAAG CGGAGTCCTG
  GTTCGGTGGG GAAAAGACAA CTTGGGAGAT ATTCAGACAA ATGAATTAGG GACATACATC
  CAGAGTCTCG CTGCAGTTAG GAGCTGACAA CCTTGTGGCT TCTAGGAAGA CATCAGAAAA
  Y
  ATGGCCAAGG ATAAAGGACG CTTGATAGCA CCGCATTCTC TATTGTGAAT GCATATCCTA
  TCACGAATTC CCTTGAAAGT AAAAGAAGCA ACTCGGGTGT GGAGGGATGC AGGAGGAAAG
  CCTACAGAAG GACGAGGTGA TGGATGAGAT TGAAGTAACT CCTACTCTAG TCAAGACAAG
  GCTCTGTTCC TCCCACACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37568414	NES08920170	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27352095					SNP	T	T	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568414	NES08920170	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150590622 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12411	CpG island 12411	135 bp proximal
Entpd6	ectonucleoside triphosphate diphosphohydrolase 6	340 bp upstream
Gm74654	predicted gene, 74654	within coordinates
Rr397383	regulatory region 397383	96 bp upstream
Rr567087	regulatory region 567087	within coordinates
Rr567088	regulatory region 567088	351 bp proximal
Rr567089	regulatory region 567089	1096 bp proximal
Rr567090	regulatory region 567090	1913 bp proximal
Tssr20707	transcription start site region 20707	334 bp upstream