rs27352099 SNP Detail

Summary

• ID
  rs27352099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150590423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGTGAGA CAAGGCAAGG
  TCCAATGAGC TGCTCACATG CTGTTTACAA TAGTTTCGCG GGACTAATAG CGATTGCCAA
  CCCTACTCTC ACACAGTATC CCCGCACTCT GTGGTTAGCA TCCACCCACT CACTCCCTGA
  GTACCCCATC TTTTCATTAG AAATCCTTGC TTTTAGGCTT TCCCAGCCGA TAGACAGGGA
  Y
  GTCCTCCAGG AACAAGACCA GTGTCCTGCA CCCCAATGTA TAGATGCCAT CACGTGGGCA
  GGAAGAAGCG GAGTCCTGGT TCGGTGGGGA AAAGACAACT TGGGAGATAT TCAGACAAAT
  GAATTAGGGA CATACATCCA GAGTCTCGCT GCAGTTAGGA GCTGACAACC TTGTGGCTTC
  TAGGAAGACA TCAGAAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568418	NES08920166	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352099					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568418	NES08920166	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150590423 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12411	CpG island 12411	334 bp proximal
Entpd6	ectonucleoside triphosphate diphosphohydrolase 6	539 bp upstream
Gm74654	predicted gene, 74654	within coordinates
Rr397383	regulatory region 397383	295 bp upstream
Rr567087	regulatory region 567087	49 bp proximal
Rr567088	regulatory region 567088	550 bp proximal
Rr567089	regulatory region 567089	1295 bp proximal
Tssr20707	transcription start site region 20707	533 bp upstream