rs27352102 SNP Detail

Summary

• ID
  rs27352102
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150590237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTCCAAT ACTAAGACTC
  TCTCCCACAG CACATCCATA GTGAGTAGCA AGATAGTCAG TCCTTGGGAT GCTGTAGTGC
  TATGTACAAC AAAACAGCCA GGGAAGTGGG GAGGGGAGAG CTTTTAAGAT CCGCCAAATA
  AGAGACCATA TAGACTTCCG TTGTAATCAG ATCTTGGTGG TTTTATTAAA GTGAGACAAG
  S
  CAAGGTCCAA TGAGCTGCTC ACATGCTGTT TACAATAGTT TCGCGGGACT AATAGCGATT
  GCCAACCCTA CTCTCACACA GTATCCCCGC ACTCTGTGGT TAGCATCCAC CCACTCACTC
  CCTGAGTACC CCATCTTTTC ATTAGAAATC CTTGCTTTTA GGCTTTCCCA GCCGATAGAC
  AGGGATGTCC TCCAGGAACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568421	NES08920163	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352102					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568421	NES08920163	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150590237 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12411	CpG island 12411	520 bp proximal
Entpd6	ectonucleoside triphosphate diphosphohydrolase 6	725 bp upstream
Gm74654	predicted gene, 74654	within coordinates
Rr397383	regulatory region 397383	481 bp upstream
Rr567087	regulatory region 567087	235 bp proximal
Rr567088	regulatory region 567088	736 bp proximal
Rr567089	regulatory region 567089	1481 bp proximal
Tssr20707	transcription start site region 20707	719 bp upstream