rs27352104 SNP Detail

Summary

• ID
  rs27352104
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150589887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATGACCA CTTGTAAAAA
  CTAAGACAAA AATTCTAGAG AATTTGAGAG AAGTATTGTG AAAGTGGAGA AGATGGTAAA
  AGATGTGAAG GCAGAAGACA GAAGCAGGGT CCTTACAGGT CCACGAACAA ACTTCAAAAC
  ACTAGAAAAT TAAGTCAAAA CTGTGAGGTG CAGTTTTTCT ACTACAAGTT AGCAAAGAAC
  Y
  CAGCGTTTGG AAGGACTCCA CCGTTGAAGA CGTGGGGAAC CCATGCTTTC ACACATTATT
  TGTAAGAGTG TTAATTAGTA CAATAACTGA AGAGAAAATT GAGTCGTATC TCTGGAGTTG
  TATTCAAAGA GCATATAGTT TATCATAGCC AATTCCAATA CTAAGACTCT CTCCCACAGC
  ACATCCATAG TGAGTAGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568423	NES08920224	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352104					SNP	C	C	C	C	C	C	T	C	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568423	NES08920224	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150589887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12411	CpG island 12411	870 bp proximal
Entpd6	ectonucleoside triphosphate diphosphohydrolase 6	1075 bp upstream
Gm74654	predicted gene, 74654	within coordinates
Rr397383	regulatory region 397383	831 bp upstream
Rr567087	regulatory region 567087	585 bp proximal
Rr567088	regulatory region 567088	1086 bp proximal
Rr567089	regulatory region 567089	1831 bp proximal
Tssr20707	transcription start site region 20707	1069 bp upstream