rs27352107 SNP Detail

Summary

• ID
  rs27352107
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150589698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGTAAAAC AGAGAACAAA
  CTGTTGGGCA TGACTTATAC TGTGAAGGAA ATACACAAAG AATGGTAGAG AATAGCTCGG
  AGAGGTCCAC TGTAAATGAA ACAGTCTGAG AAGGTGGCAT TATGTTATTT TAAAAGTGAG
  AAAAGATCTA CAAAAGGAAA TGCCTGAGAG AATAGCTTTC CAAGTAGTGA GTATGACCAC
  W
  TGTAAAAACT AAGACAAAAA TTCTAGAGAA TTTGAGAGAA GTATTGTGAA AGTGGAGAAG
  ATGGTAAAAG ATGTGAAGGC AGAAGACAGA AGCAGGGTCC TTACAGGTCC ACGAACAAAC
  TTCAAAACAC TAGAAAATTA AGTCAAAACT GTGAGGTGCA GTTTTTCTAC TACAAGTTAG
  CAAAGAACCC AGCGTTTGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568426	NES08920221	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352107					SNP	T	T	T	T	T	T	A	T	T	T	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568426	NES08920221	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150589698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12411	CpG island 12411	1059 bp proximal
Entpd6	ectonucleoside triphosphate diphosphohydrolase 6	1264 bp upstream
Gm74654	predicted gene, 74654	within coordinates
Rr397383	regulatory region 397383	1020 bp upstream
Rr567087	regulatory region 567087	774 bp proximal
Rr567088	regulatory region 567088	1275 bp proximal
Tssr20707	transcription start site region 20707	1258 bp upstream