rs27352515 SNP Detail

Summary

• ID
  rs27352515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151581384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCACAATC AAACTTGGCT
  AGGTGACAAG GAGACTGGTA GCCTCAGCAG AGACAGGAGA GTAAGGAGAA AACAAAACTG
  AAGCTAGCCA CAGCCTGAGA AACCCTCTTG CCTTTCTGGG TAACTTCCTA GTGTGGTGTG
  GACTTCAAGG GTGACTCGGG TGTTTAAGGC AGGGCTGGCA GACCTTACCT GTGTTCAGTC
  R
  AGACCTTTGA CTCTCTCCTG TCCTACATGG ACAGCACTGG CCCTACCAGC AGGCGCTCTT
  GACTTACAGA CAACCTGCTC TGCTCCCCAC CTCGACACCT TCATTCCGGA GCAAGAAATA
  ATCGCTAGGG TCAGGTAAAG CTCACAGCCT CACTGTGGTA AGGTGAAACG GATACTCCAC
  AGAAAACAGA AGCTAGACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37564537	NES08917799	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352515					SNP	A	A	A	A	A	A	A	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37564537	NES08917799	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151581384 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12424	CpG island 12424	1157 bp proximal
Psmf1	proteasome (prosome, macropain) inhibitor subunit 1	within coordinates
Rr567191	regulatory region 567191	541 bp distal
Rr567192	regulatory region 567192	within coordinates
Rr567193	regulatory region 567193	1763 bp proximal
Rr567194	regulatory region 567194	1836 bp proximal
Tssr26747	transcription start site region 26747	1692 bp downstream
Tssr26748	transcription start site region 26748	1708 bp downstream
Tssr26749	transcription start site region 26749	1744 bp downstream
Tssr26750	transcription start site region 26750	1758 bp downstream
Tssr26751	transcription start site region 26751	1772 bp downstream