rs27352517 SNP Detail

Summary

• ID
  rs27352517
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151581222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCACGAC CAGAAGCTGT
  GTTCATGAGA GCATGGTAGG ATGGGATGGG ATGGGAAGGA GTGGGGCGAT GGACAACACT
  GACAAAGGCC CACACATGAA GGACTTTACA CAGCAAGTGC AGGGGAGGCC ACCCCTGGTG
  TTTGGAAATC CTTTGCCAGA GGAGTCACAA TCAAACTTGG CTAGGTGACA AGGAGACTGG
  W
  AGCCTCAGCA GAGACAGGAG AGTAAGGAGA AAACAAAACT GAAGCTAGCC ACAGCCTGAG
  AAACCCTCTT GCCTTTCTGG GTAACTTCCT AGTGTGGTGT GGACTTCAAG GGTGACTCGG
  GTGTTTAAGG CAGGGCTGGC AGACCTTACC TGTGTTCAGT CAAGACCTTT GACTCTCTCC
  TGTCCTACAT GGACAGCACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37564539	NES08917797	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352517					SNP	T	T	T	T	T	T	A	T	T	T	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37564539	NES08917797	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151581222 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12424	CpG island 12424	1319 bp proximal
Psmf1	proteasome (prosome, macropain) inhibitor subunit 1	within coordinates
Rr567191	regulatory region 567191	379 bp distal
Rr567192	regulatory region 567192	within coordinates
Rr567193	regulatory region 567193	1925 bp proximal
Rr567194	regulatory region 567194	1998 bp proximal
Tssr26747	transcription start site region 26747	1854 bp downstream
Tssr26748	transcription start site region 26748	1870 bp downstream
Tssr26749	transcription start site region 26749	1906 bp downstream
Tssr26750	transcription start site region 26750	1920 bp downstream
Tssr26751	transcription start site region 26751	1934 bp downstream