rs27352735 SNP Detail

Summary

• ID
  rs27352735
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153004427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACTATCAT GAAGCTGACT AGAATTAAGT CTCTTTGTGG
  ATGAGAGTGG AGGTAATATA CCTGTGCCTG AAGGATGAGT CACTAGCTGA CTTCTGTTTA
  Y
  CAACCACAGA ATTAAGTTTT TGAAGGTCAG ATTTTCTAAG AGAAGTTCAC CTCAAATTCT
  GTTTGCCAAG AAATGAGAAC AAAAGTCGAA AGTGAATTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560454	NES08919253	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C	T	T	C	T	T	C	C	T	C	T
ss147986906	ENSMUSSNP6859349	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352735					SNP	T	T	C	T	T	C	T	T	C	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560454	NES08919253	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153004427 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12480	CpG island 12480	441 bp distal
Gm75427	predicted gene, 75427	382 bp upstream
Gm75432	predicted gene, 75432	998 bp upstream
Rr39415	regulatory region 39415	1374 bp proximal
Rr55859	regulatory region 55859	within coordinates
Rr397404	regulatory region 397404	1066 bp downstream
Tm9sf4	transmembrane 9 superfamily member 4	within coordinates
Tssr20873	transcription start site region 20873	1200 bp downstream
Tssr20874	transcription start site region 20874	1168 bp downstream
Tssr20875	transcription start site region 20875	954 bp downstream
Tssr20876	transcription start site region 20876	551 bp downstream
Tssr20877	transcription start site region 20877	531 bp downstream
Tssr26883	transcription start site region 26883	1036 bp upstream