rs27352742 SNP Detail

Summary

• ID
  rs27352742
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153002472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAAGGTC TCACATGTCC
  CAGGATAACC ATGAACTCTT CTTGCTGGAC CTTCTGAGTT TGGGGATTAC AAGTCCCAGT
  GCTAAAGATT AGGCAGGCTA TCTGCTAAAT TAACTATATC CTCAGAACTC ATTACTACTC
  TCTTAACAGC TTTTTGGATC CATCTAAGAA GACCGCACTG GCTCTTTGTA CACTTTACAG
  W
  GGTATATATG AACCAAACAG TCTTTCTCCA TTATGATCCT TTGAGTCCTC CCCAGACCCT
  TTTAAGTCAA TACTGGAAAG TTAAGTTTAA GATGGTTAAG TGACTTGCTT CAAGTCATAC
  ATTAAGCCAG TTAGAATGGA GAAGTCCACA TTGAAAAATG TCTCCTTTCA CTAAGTGTTC
  TGCTTTTCAT TCACTCATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560461	NES08919299	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352742					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560461	NES08919299	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153002472 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12480	CpG island 12480	849 bp proximal
Gm75427	predicted gene, 75427	within coordinates
Gm75432	predicted gene, 75432	565 bp downstream
Rr55859	regulatory region 55859	128 bp proximal
Rr397404	regulatory region 397404	588 bp upstream
Tm9sf4	transmembrane 9 superfamily member 4	751 bp upstream
Tssr20873	transcription start site region 20873	740 bp upstream
Tssr20874	transcription start site region 20874	769 bp upstream
Tssr20875	transcription start site region 20875	972 bp upstream
Tssr20876	transcription start site region 20876	1376 bp upstream
Tssr20877	transcription start site region 20877	1406 bp upstream
Tssr26883	transcription start site region 26883	908 bp downstream