rs27352744 SNP Detail

Summary

• ID
  rs27352744
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153002005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAAAAAAA TTCACCTTTT GACAGGAGAA CCAGTATGCT
  CATAACATGC AAGAAGGAGA GGCTTGTTAG TAGACATTTA TGCAGAAAAA AATCCACCAC
  R
  GTAGTAATCA GTACTGACCA CAGTGGTGGT CAGAGCTCAG CTGTTCCTTG CCAAGGTGCA
  GAAGAGATAA CTAAAAATCT TAAGACCAGT TTTGGCACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560463	NES08919347	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	A	G		G	A	G	G	A	G	G	G
ss45273053	mCV22911095	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G		A
ss147986870	ENSMUSSNP6402880	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352744					SNP	G	G	A	G	G	A	G	G	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560463	NES08919347	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153002005 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12480	CpG island 12480	1316 bp proximal
Gm75427	predicted gene, 75427	within coordinates
Gm75432	predicted gene, 75432	1032 bp downstream
Rr55859	regulatory region 55859	595 bp proximal
Rr397404	regulatory region 397404	1055 bp upstream
Tm9sf4	transmembrane 9 superfamily member 4	1218 bp upstream
Tssr20873	transcription start site region 20873	1207 bp upstream
Tssr20874	transcription start site region 20874	1236 bp upstream
Tssr20875	transcription start site region 20875	1439 bp upstream
Tssr20876	transcription start site region 20876	1843 bp upstream
Tssr20877	transcription start site region 20877	1873 bp upstream
Tssr26883	transcription start site region 26883	1375 bp downstream