rs27352746 SNP Detail

Summary

• ID
  rs27352746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153001997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAAGGAG AAGCTTCAAG
  CCTCTTACAG CCTAGACACA GAAGTGGAAG ACACTTATAA TTCACTCTAT TTGGTCAAAG
  CAAGTAACTT AACCCCAGCA TTCAACAAGA GAAAAAAATT CACCTTTTGA CAGGAGAACC
  AGTATGCTCA TAACATGCAA GAAGGAGAGG CTTGTTAGTA GACATTTATG CAGAAAAAAA
  Y
  CCACCACGGT AGTAATCAGT ACTGACCACA GTGGTGGTCA GAGCTCAGCT GTTCCTTGCC
  AAGGTGCAGA AGAGATAACT AAAAATCTTA AGACCAGTTT TGGCACAGTA CTTAAGCAAT
  GCTGAGTTTT CTGTTTAGCC CGTGGCTCTC TTTATGGCTC AGGATGGTCT TGAACTCACC
  ATGCCTTCCT TCCTCAGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560465	NES08919345	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352746					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560465	NES08919345	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153001997 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12480	CpG island 12480	1324 bp proximal
Gm75427	predicted gene, 75427	within coordinates
Gm75432	predicted gene, 75432	1040 bp downstream
Rr55859	regulatory region 55859	603 bp proximal
Rr397404	regulatory region 397404	1063 bp upstream
Tm9sf4	transmembrane 9 superfamily member 4	1226 bp upstream
Tssr20873	transcription start site region 20873	1215 bp upstream
Tssr20874	transcription start site region 20874	1244 bp upstream
Tssr20875	transcription start site region 20875	1447 bp upstream
Tssr20876	transcription start site region 20876	1851 bp upstream
Tssr20877	transcription start site region 20877	1881 bp upstream
Tssr26883	transcription start site region 26883	1383 bp downstream