rs27352747 SNP Detail

Summary

• ID
  rs27352747
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153001467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGTTGAT GCTGGGACTC
  AAACTCTGAT ATTCTAGAAG AGGATCTTCC AATGGTCTTA ACTGCTGAGT CATGTCTCCA
  GCCCCATCAG TATTACTCTT TAACCAGACA TAGTGGTAAG AAACTTCCAG GACTTAAGTT
  GCAGTAGAAC TGGCCACAAG TCTGCAATTC AGAATTACTA CAAGACTATC TAGTAAATCC
  R
  TCCTGCTTCT CTAGCTCTGT GCCTCTTGGG AATATATCTG CTCTTTGGGA TGGTGTGTTG
  GTCCCAGGCA TTTATGGGTT TGTTTTTCAG CACTCATAAC AATCCAACCC AATACTAAAT
  CAACTAGGCT CAACCAAGTA GTTCTTTTGT TCCAAATATC AATAAGGATA TTCACATGTT
  CTATATTTAG TTAGTAGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560466	NES08919370	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	G	A		G	G	A	A	G	A	G	A
ss45312536	mCV22911094	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					A		G
ss147986865	ENSMUSSNP3598423	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352747					SNP	A	A	G	A	A	G	A	A	G	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560466	NES08919370	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153001467 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12480	CpG island 12480	1854 bp proximal
Gm75427	predicted gene, 75427	within coordinates
Gm75432	predicted gene, 75432	1570 bp downstream
Rr39414	regulatory region 39414	1867 bp distal
Rr55859	regulatory region 55859	1133 bp proximal
Rr63655	regulatory region 63655	1860 bp distal
Rr397404	regulatory region 397404	1593 bp upstream
Tm9sf4	transmembrane 9 superfamily member 4	1756 bp upstream
Tssr20873	transcription start site region 20873	1745 bp upstream
Tssr20874	transcription start site region 20874	1774 bp upstream
Tssr20875	transcription start site region 20875	1977 bp upstream
Tssr26883	transcription start site region 26883	1913 bp downstream