rs27352748 SNP Detail

Summary

• ID
  rs27352748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153001434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAAATTG GAGTTACAGA
  CTGTTGTGCG CAGCCATGTT GATGCTGGGA CTCAAACTCT GATATTCTAG AAGAGGATCT
  TCCAATGGTC TTAACTGCTG AGTCATGTCT CCAGCCCCAT CAGTATTACT CTTTAACCAG
  ACATAGTGGT AAGAAACTTC CAGGACTTAA GTTGCAGTAG AACTGGCCAC AAGTCTGCAA
  Y
  TCAGAATTAC TACAAGACTA TCTAGTAAAT CCATCCTGCT TCTCTAGCTC TGTGCCTCTT
  GGGAATATAT CTGCTCTTTG GGATGGTGTG TTGGTCCCAG GCATTTATGG GTTTGTTTTT
  CAGCACTCAT AACAATCCAA CCCAATACTA AATCAACTAG GCTCAACCAA GTAGTTCTTT
  TGTTCCAAAT ATCAATAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560467	NES08919369	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352748					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560467	NES08919369	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153001434 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12480	CpG island 12480	1887 bp proximal
Gm75427	predicted gene, 75427	within coordinates
Gm75432	predicted gene, 75432	1603 bp downstream
Rr39414	regulatory region 39414	1834 bp distal
Rr55859	regulatory region 55859	1166 bp proximal
Rr63655	regulatory region 63655	1827 bp distal
Rr397404	regulatory region 397404	1626 bp upstream
Tm9sf4	transmembrane 9 superfamily member 4	1789 bp upstream
Tssr20873	transcription start site region 20873	1778 bp upstream
Tssr20874	transcription start site region 20874	1807 bp upstream
Tssr26883	transcription start site region 26883	1946 bp downstream