rs27352944 SNP Detail

Summary

• ID
  rs27352944
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152951534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAACTCT GTAAAATGGG
  CTGTTTTACA TTCATCTGAA GCTGAGTTGT CCAGAGAAGG GGAGCAGTGC TGCTGGGTAC
  TGGAGAGAGA GCCTGGTTTG TCTGTGCCTC TGTTTGCATA GCTGCAGGAT GGAGATGGTA
  AGAGGACAGG TTGAATGTTC CCTATCCAAA CTACACCTGA TCAGAGGGGT TTAGGATTTC
  M
  GAGTGTGGCA GAATTCTGTA TGTCAAGTGC ACAGCGAGGC ATCCTGGAGT GAAAATTAGG
  TCTTAAAGAG ACATTTGTGT ATGTTACACG TGCTTCTGTA TGTGTTCACT GGTTGGTGTG
  TACTCTGGGG TTCCTACACA CGTGGAGGCC AGAGGACTCT ATGTTGTTCT TCAAGCAAAG
  GCCACCTTGC TTTTGGAGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560669	NES08920847	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	C	C	C		A	C	C	C	A	A	A	A	C
ss45202797	mCV22910327	ABI	CRAMUS_MOUSE	f	SNP	C	C	A					C		C
ss147984341	ENSMUSSNP2116203	ENSEMBL	ENSEMBL_Sanger	f	SNP			A							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352944					SNP	C	C	A	C	C	C	C	C	A	C	C	C	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560669	NES08920847	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152951534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	462 bp distal
Hck	hemopoietic cell kinase	within coordinates
Rr567550	regulatory region 567550	1576 bp distal
Rr567551	regulatory region 567551	1136 bp distal
Rr567552	regulatory region 567552	1086 bp distal
Rr567553	regulatory region 567553	922 bp distal
Tssr20863	transcription start site region 20863	1941 bp downstream
Tssr20864	transcription start site region 20864	1905 bp downstream
Tssr20865	transcription start site region 20865	1130 bp downstream
Tssr20866	transcription start site region 20866	1072 bp downstream
Tssr26882	transcription start site region 26882	592 bp upstream