rs27352946 SNP Detail

Summary

• ID
  rs27352946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152951368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGTATAT CTGAGTCCCC
  TCTTTTACAT CTTCCCCTGC CTTCCCAGCT GAACCCCTAA CAGGCGTACA TCCAACTCCA
  GAACCTCTTA CACAAAGACC ACAATCTACC ACCATCTCCT CTGTGTGACA CTGGGGCATG
  TCACTGGCTA CTCTCTGGAT TCCAGCTTCC AACTCTGTAA AATGGGCTGT TTTACATTCA
  Y
  CTGAAGCTGA GTTGTCCAGA GAAGGGGAGC AGTGCTGCTG GGTACTGGAG AGAGAGCCTG
  GTTTGTCTGT GCCTCTGTTT GCATAGCTGC AGGATGGAGA TGGTAAGAGG ACAGGTTGAA
  TGTTCCCTAT CCAAACTACA CCTGATCAGA GGGGTTTAGG ATTTCCGAGT GTGGCAGAAT
  TCTGTATGTC AAGTGCACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560671	NES08920845	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T		C	T	T	T	C	C	C	C	T
ss45211411	mCV22910318	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					T		T
ss147984327	ENSMUSSNP5643569	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352946					SNP	T	T	C	T	T	T	T	T	C	T	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560671	NES08920845	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152951368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	296 bp distal
Hck	hemopoietic cell kinase	within coordinates
Rr567550	regulatory region 567550	1410 bp distal
Rr567551	regulatory region 567551	970 bp distal
Rr567552	regulatory region 567552	920 bp distal
Rr567553	regulatory region 567553	756 bp distal
Tssr20863	transcription start site region 20863	1775 bp downstream
Tssr20864	transcription start site region 20864	1739 bp downstream
Tssr20865	transcription start site region 20865	964 bp downstream
Tssr20866	transcription start site region 20866	906 bp downstream
Tssr26882	transcription start site region 26882	426 bp upstream