rs27352947 SNP Detail

Summary

• ID
  rs27352947
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152951166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCC TGCCACACCC AGGCCTGGCT
  R
  TAGGTGTATA TCTGAGTCCC CTCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37560672	NES08920890	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	G		G	G	G	G		G	G	G	G		G
ss45268043	mCV22910316	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					A		G
ss147984318	ENSMUSSNP1577458	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss320564072	CHEV_2_152934982	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27352947					SNP	G	G	G	A	G	A	G	A	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560672	NES08920890	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152951166 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	94 bp distal
Hck	hemopoietic cell kinase	within coordinates
Rr567550	regulatory region 567550	1208 bp distal
Rr567551	regulatory region 567551	768 bp distal
Rr567552	regulatory region 567552	718 bp distal
Rr567553	regulatory region 567553	554 bp distal
Tssr20863	transcription start site region 20863	1573 bp downstream
Tssr20864	transcription start site region 20864	1537 bp downstream
Tssr20865	transcription start site region 20865	762 bp downstream
Tssr20866	transcription start site region 20866	704 bp downstream
Tssr26882	transcription start site region 26882	224 bp upstream