rs27352948 SNP Detail

Summary

• ID
  rs27352948
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152950883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTGAGAG GGCGGGAATG
  GGACACACCC CCGTCCCCGA GAACGTGCAG ACCTCGGGCT CCAGGGATCT GAGATCCTGG
  GCGAGCTGTG GGGGTGCCGA GGAAGGAAGA ACCCGTCCTA GGAGCAACCG ATCCCCGGCG
  GTGGGATGCG CAGTCTACGA AAGGTGGAGG GTACCCAGGT GGCCAGGTGA GGCGAATTGC
  M
  GCCACCCAGG GCGACCCTGG GATAGCCCTA GATAGAGGAA GCTCAGGCAG GGGAATGGCA
  GTGCTGAGCT GAGGCTTCTC TGTCTAACCA GGTTCCCCTT CTGCACACAC ACACACACAC
  ACACACACAC ACACCAAGAA GAAGAAGCTG GAGGGGAGGG AAAGGCCCGT TCAGTTCCCA
  TTGATGGTGG GTGGGTGGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560673	NES08920889	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352948					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560673	NES08920889	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152950883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	within coordinates
Hck	hemopoietic cell kinase	within coordinates
Rr567550	regulatory region 567550	925 bp distal
Rr567551	regulatory region 567551	485 bp distal
Rr567552	regulatory region 567552	435 bp distal
Rr567553	regulatory region 567553	271 bp distal
Tssr20863	transcription start site region 20863	1290 bp downstream
Tssr20864	transcription start site region 20864	1254 bp downstream
Tssr20865	transcription start site region 20865	479 bp downstream
Tssr20866	transcription start site region 20866	421 bp downstream
Tssr26882	transcription start site region 26882	55 bp downstream