rs27352949 SNP Detail

Summary

• ID
  rs27352949
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152950834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGATCCGG GCTGCCCACG
  AAGCGAAGGG CGGGCGCCCA GGTGAGTGCG GGGTGAGAGG GCGGGAATGG GACACACCCC
  CGTCCCCGAG AACGTGCAGA CCTCGGGCTC CAGGGATCTG AGATCCTGGG CGAGCTGTGG
  GGGTGCCGAG GAAGGAAGAA CCCGTCCTAG GAGCAACCGA TCCCCGGCGG TGGGATGCGC
  W
  GTCTACGAAA GGTGGAGGGT ACCCAGGTGG CCAGGTGAGG CGAATTGCCG CCACCCAGGG
  CGACCCTGGG ATAGCCCTAG ATAGAGGAAG CTCAGGCAGG GGAATGGCAG TGCTGAGCTG
  AGGCTTCTCT GTCTAACCAG GTTCCCCTTC TGCACACACA CACACACACA CACACACACA
  CACCAAGAAG AAGAAGCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560674	NES08920888	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	A	A	A		T	A	A	A	T	T	T	T	A
ss45255855	mCV22910309	ABI	CRAMUS_MOUSE	f	SNP		A	T					A		A
ss147984310	ENSMUSSNP2913666	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352949					SNP	A	A	T	A	A	A	A	A	T	A	A	A	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560674	NES08920888	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152950834 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	within coordinates
Hck	hemopoietic cell kinase	within coordinates
Rr567550	regulatory region 567550	876 bp distal
Rr567551	regulatory region 567551	436 bp distal
Rr567552	regulatory region 567552	386 bp distal
Rr567553	regulatory region 567553	222 bp distal
Tssr20863	transcription start site region 20863	1241 bp downstream
Tssr20864	transcription start site region 20864	1205 bp downstream
Tssr20865	transcription start site region 20865	430 bp downstream
Tssr20866	transcription start site region 20866	372 bp downstream
Tssr26882	transcription start site region 26882	104 bp downstream