rs27352950 SNP Detail

Summary

• ID
  rs27352950
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152950811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTGGGGGG TCGGTCTAGC
  TGCGAGGATC CGGGCTGCCC ACGAAGCGAA GGGCGGGCGC CCAGGTGAGT GCGGGGTGAG
  AGGGCGGGAA TGGGACACAC CCCCGTCCCC GAGAACGTGC AGACCTCGGG CTCCAGGGAT
  CTGAGATCCT GGGCGAGCTG TGGGGGTGCC GAGGAAGGAA GAACCCGTCC TAGGAGCAAC
  S
  GATCCCCGGC GGTGGGATGC GCAGTCTACG AAAGGTGGAG GGTACCCAGG TGGCCAGGTG
  AGGCGAATTG CCGCCACCCA GGGCGACCCT GGGATAGCCC TAGATAGAGG AAGCTCAGGC
  AGGGGAATGG CAGTGCTGAG CTGAGGCTTC TCTGTCTAAC CAGGTTCCCC TTCTGCACAC
  ACACACACAC ACACACACAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560675	NES08920887	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352950					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560675	NES08920887	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152950811 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	within coordinates
Hck	hemopoietic cell kinase	within coordinates
Rr567550	regulatory region 567550	853 bp distal
Rr567551	regulatory region 567551	413 bp distal
Rr567552	regulatory region 567552	363 bp distal
Rr567553	regulatory region 567553	199 bp distal
Tssr20863	transcription start site region 20863	1218 bp downstream
Tssr20864	transcription start site region 20864	1182 bp downstream
Tssr20865	transcription start site region 20865	407 bp downstream
Tssr20866	transcription start site region 20866	349 bp downstream
Tssr26882	transcription start site region 26882	127 bp downstream