rs27352953 SNP Detail

Summary

• ID
  rs27352953
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152950176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACACCGC TCTGAGGCTC
  CAGGGTACTT ACACACATAC ACGGAAACAA TCAACCAGTC AAACAATAAA CGTAAAATAT
  TACAATTCTT TAGGGAATCC AAGGGTATTT GGTCTCTTAG GTAGGGGTCC AAAATCTCTG
  GGGATAGGGT TTAGAATCCT TTGGACAGGC TCATTACATC ATGGGGGGCT TAAACGCACT
  M
  GTGGGGGAGG GGGACTGGGA ATCTTGGGAG GGCGGGTCAA ACCTTGGTGT CTGAGTAAGT
  CCTTCAAGGA CTGGTTAGCG CCCTTGAGGA CAGGGTTAGC AAAGAAATGC TGAAATTCTT
  TGGAGGTGAA TTTAGAGCAG GAGACAAGAG AGCCAGAGTG GGAGTTAGGC TCTTAGAGGG
  CGGAGTCGGG GTATTTGGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37560678	NES08920884	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	A	A	A	A	A	A	A	C	C	A
ss147984277	ENSMUSSNP701350	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27352953					SNP	A	C	A	A	A	A	A	A	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560678	NES08920884	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152950176 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	189 bp proximal
Hck	hemopoietic cell kinase	212 bp upstream
Rr567550	regulatory region 567550	218 bp distal
Rr567551	regulatory region 567551	within coordinates
Rr567552	regulatory region 567552	251 bp proximal
Rr567553	regulatory region 567553	415 bp proximal
Tssr20863	transcription start site region 20863	583 bp downstream
Tssr20864	transcription start site region 20864	547 bp downstream
Tssr20865	transcription start site region 20865	218 bp upstream
Tssr20866	transcription start site region 20866	233 bp upstream
Tssr26882	transcription start site region 26882	762 bp downstream