rs27352954 SNP Detail

Summary

• ID
  rs27352954
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152950142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGATCCT AGTCCTCCAA
  ATTGTTCTCT AACCTCTACA CCGCTCTGAG GCTCCAGGGT ACTTACACAC ATACACGGAA
  ACAATCAACC AGTCAAACAA TAAACGTAAA ATATTACAAT TCTTTAGGGA ATCCAAGGGT
  ATTTGGTCTC TTAGGTAGGG GTCCAAAATC TCTGGGGATA GGGTTTAGAA TCCTTTGGAC
  M
  GGCTCATTAC ATCATGGGGG GCTTAAACGC ACTAGTGGGG GAGGGGGACT GGGAATCTTG
  GGAGGGCGGG TCAAACCTTG GTGTCTGAGT AAGTCCTTCA AGGACTGGTT AGCGCCCTTG
  AGGACAGGGT TAGCAAAGAA ATGCTGAAAT TCTTTGGAGG TGAATTTAGA GCAGGAGACA
  AGAGAGCCAG AGTGGGAGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560679	NES08920883	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	A	A	A	A	A	A	A	C	C	C	C	A
ss147984267	ENSMUSSNP2966433	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352954					SNP	A	C	A	A	A	A	A	A	A	A	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560679	NES08920883	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152950142 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	223 bp proximal
Hck	hemopoietic cell kinase	246 bp upstream
Rr567550	regulatory region 567550	184 bp distal
Rr567551	regulatory region 567551	within coordinates
Rr567552	regulatory region 567552	285 bp proximal
Rr567553	regulatory region 567553	449 bp proximal
Tssr20863	transcription start site region 20863	549 bp downstream
Tssr20864	transcription start site region 20864	513 bp downstream
Tssr20865	transcription start site region 20865	252 bp upstream
Tssr20866	transcription start site region 20866	267 bp upstream
Tssr26882	transcription start site region 26882	796 bp downstream