rs27352956 SNP Detail

Summary

• ID
  rs27352956
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152949607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGACTTT GCATGGAGTT
  TGAATAAGCG GTGGGTGGGC GGGTGGAGGG AAAACCGCTG CATGTGGGAG GGACCGAAGT
  GGAAGGGCGG TGGAGACCCA CCAGAATCCT AGAGGGAGAG GTTAGACTTA TCAGGGCGTG
  GTTAGACTTA AAGGGAGCTA CATTCCTTCT GCGGCTGGTT TAGGATCTTT GAAAGGAAGG
  R
  TAGGATCGGT TGATTGCTCC AGTGCAGGAT TTAGGACCTA TGGGATTAAG GTCTCGTAGG
  GGGCTGGTGG CTGTAGTACA AACTACGGAG AGAGAGGCCC TGGATTCCAT TCTCTAGAAC
  ACACAAGCGC GCGCGCGCGC GCTCTCGAGA TTAAAACCCT TTCAGAAAAT TTGATTACAA
  ATCTAGAGAA TTTGTAGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560681	NES08920942	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A	G	A	A	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352956					SNP	A	G	A	A	A	A	G	A	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560681	NES08920942	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152949607 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	758 bp proximal
Hck	hemopoietic cell kinase	781 bp upstream
Rr567550	regulatory region 567550	within coordinates
Rr567551	regulatory region 567551	504 bp proximal
Rr567552	regulatory region 567552	820 bp proximal
Rr567553	regulatory region 567553	984 bp proximal
Tssr20863	transcription start site region 20863	14 bp downstream
Tssr20864	transcription start site region 20864	15 bp upstream
Tssr20865	transcription start site region 20865	787 bp upstream
Tssr20866	transcription start site region 20866	802 bp upstream
Tssr26882	transcription start site region 26882	1331 bp downstream