rs27352957 SNP Detail

Summary

• ID
  rs27352957
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152949538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTA GAGGGAGAGG TTAGACTTAT
  Y
  AGGGCGTGGT TAGACTTAAA GGGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37560682	NES08920941	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	T	T	T	T		T	T	T	T		T
ss147984231	ENSMUSSNP4098672	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T
ss320564069	CHEV_2_152933354	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27352957					SNP	T	T	T	C	T	C	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560682	NES08920941	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152949538 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	827 bp proximal
Hck	hemopoietic cell kinase	850 bp upstream
Rr567550	regulatory region 567550	within coordinates
Rr567551	regulatory region 567551	573 bp proximal
Rr567552	regulatory region 567552	889 bp proximal
Rr567553	regulatory region 567553	1053 bp proximal
Tssr20863	transcription start site region 20863	38 bp upstream
Tssr20864	transcription start site region 20864	84 bp upstream
Tssr20865	transcription start site region 20865	856 bp upstream
Tssr20866	transcription start site region 20866	871 bp upstream
Tssr26882	transcription start site region 26882	1400 bp downstream