rs27352959 SNP Detail

Summary

• ID
  rs27352959
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152949213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGTGTA GGAGGCAGCT
  CTGGTTGTCA GAACTGCTAC TGGGCCTAGC GGGTGGAACT CTAGAGCTGC TAACACCGCT
  CGCGCTCAGA ATTCATACTT AAAACATAGT ACTGCTAAAC GCATGCCTAC ATGCACGCGT
  AAGCGAATGA ATGAGAGATA CTGGTGGTCT GGCCTGGCTA GAGGAGGGAG GACTCCTGTA
  Y
  GTTTCTGCAG GTGTGTGTTG CAGTTTAGAG AGTGTTGGTC CCTGTCGTTT TGAATGATGT
  CTCAGGCTGA GTGGAATATG CCATGCAAAC AGGACCTCAG TGGTCTGCCA GTAAGACTTC
  CTCTCTTCAA CTTGGGAGGT CCTCTGAGCA GTCCCATATT CAGCCCAGAA TAAGGCAAAG
  AACTCCCGCG GGCGCCAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560684	NES08920939	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	C	C	C	T	T	T	T	C
ss147984221	ENSMUSSNP2289017	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352959					SNP	C	C	T	C	C	C	C	C	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560684	NES08920939	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152949213 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	1152 bp proximal
Hck	hemopoietic cell kinase	1175 bp upstream
Rr567550	regulatory region 567550	73 bp proximal
Rr567551	regulatory region 567551	898 bp proximal
Rr567552	regulatory region 567552	1214 bp proximal
Rr567553	regulatory region 567553	1378 bp proximal
Tssr20863	transcription start site region 20863	363 bp upstream
Tssr20864	transcription start site region 20864	409 bp upstream
Tssr20865	transcription start site region 20865	1181 bp upstream
Tssr20866	transcription start site region 20866	1196 bp upstream
Tssr26882	transcription start site region 26882	1725 bp downstream