rs27352961 SNP Detail

Summary

• ID
  rs27352961
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152949129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAAATAG GGCATGAATA
  TATTAAAATA CATAGCAAAC ACATTAGTGT TGGGTGACTG GGATTTCTAC GTGGGCTGGG
  GACCAGGCTG TGTAGGAGGC AGCTCTGGTT GTCAGAACTG CTACTGGGCC TAGCGGGTGG
  AACTCTAGAG CTGCTAACAC CGCTCGCGCT CAGAATTCAT ACTTAAAACA TAGTACTGCT
  R
  AACGCATGCC TACATGCACG CGTAAGCGAA TGAATGAGAG ATACTGGTGG TCTGGCCTGG
  CTAGAGGAGG GAGGACTCCT GTACGTTTCT GCAGGTGTGT GTTGCAGTTT AGAGAGTGTT
  GGTCCCTGTC GTTTTGAATG ATGTCTCAGG CTGAGTGGAA TATGCCATGC AAACAGGACC
  TCAGTGGTCT GCCAGTAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560686	NES08920937	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	A	A	A	A	A	G	G	G	G	A
ss147984207	ENSMUSSNP3083078	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352961					SNP	A	A	G	A	A	A	A	A	A	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560686	NES08920937	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152949129 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	1236 bp proximal
Hck	hemopoietic cell kinase	1259 bp upstream
Rr567550	regulatory region 567550	157 bp proximal
Rr567551	regulatory region 567551	982 bp proximal
Rr567552	regulatory region 567552	1298 bp proximal
Rr567553	regulatory region 567553	1462 bp proximal
Tssr20863	transcription start site region 20863	447 bp upstream
Tssr20864	transcription start site region 20864	493 bp upstream
Tssr20865	transcription start site region 20865	1265 bp upstream
Tssr20866	transcription start site region 20866	1280 bp upstream
Tssr26882	transcription start site region 26882	1809 bp downstream