rs27352965 SNP Detail

Summary

• ID
  rs27352965
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152948798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGGTTGG GGCAGACCAG
  AGTGCTGGAG GCCTAAGGCC CTCCGGGCAT CCCTCACCAA CCATCCCACA GGAGTGTTTA
  AATGCCAGGC CTTTGTCTCT AGGTGGATAA TCGGGGACCG GGAGGTTGGA AGCAGGGGGT
  GACAATGTGT GTGTATAATA CACTGCCTTC TGTCCCAACC GGACAGCTAG CTCTGTGACG
  M
  TGCCTTTATT GGCTTCTTTC CCATCTCAAT CTCCTTCACT CAGTAGATAA CAAGCATTGT
  TTACTGCTAC ACAGACTAAT TTCACTTCTG TGTCCAAGTC AATTAAACCT GTTCAAGACT
  CGGTCTATTT TTAGAAATAG GGCATGAATA TATTAAAATA CATAGCAAAC ACATTAGTGT
  TGGGTGACTG GGATTTCTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560690	NES08920933	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	C	C	C	C	C	C	C	A	A	A	C	C
ss147984186	ENSMUSSNP4288374	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352965					SNP	C	C	A	C	C	C	C	C	C	C	C	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560690	NES08920933	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152948798 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	1567 bp proximal
Hck	hemopoietic cell kinase	1590 bp upstream
Rr567550	regulatory region 567550	488 bp proximal
Rr567551	regulatory region 567551	1313 bp proximal
Rr567552	regulatory region 567552	1629 bp proximal
Rr567553	regulatory region 567553	1793 bp proximal
Tssr20863	transcription start site region 20863	778 bp upstream
Tssr20864	transcription start site region 20864	824 bp upstream
Tssr20865	transcription start site region 20865	1596 bp upstream
Tssr20866	transcription start site region 20866	1611 bp upstream