rs27352967 SNP Detail

Summary

• ID
  rs27352967
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152948699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTGTTAA CCGAGATGTT
  AGGGATGCTG GTTATATCCT TCTAATTTCC CCCTGGGCCT GTCCCAGGAC CTACCTCCCT
  CATCCTGGAG GCCCAGGAAG CATGGTTGGG GCAGACCAGA GTGCTGGAGG CCTAAGGCCC
  TCCGGGCATC CCTCACCAAC CATCCCACAG GAGTGTTTAA ATGCCAGGCC TTTGTCTCTA
  R
  GTGGATAATC GGGGACCGGG AGGTTGGAAG CAGGGGGTGA CAATGTGTGT GTATAATACA
  CTGCCTTCTG TCCCAACCGG ACAGCTAGCT CTGTGACGCT GCCTTTATTG GCTTCTTTCC
  CATCTCAATC TCCTTCACTC AGTAGATAAC AAGCATTGTT TACTGCTACA CAGACTAATT
  TCACTTCTGT GTCCAAGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560692	NES08920931	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27352967					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560692	NES08920931	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152948699 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	1666 bp proximal
Hck	hemopoietic cell kinase	1689 bp upstream
Rr567550	regulatory region 567550	587 bp proximal
Rr567551	regulatory region 567551	1412 bp proximal
Rr567552	regulatory region 567552	1728 bp proximal
Rr567553	regulatory region 567553	1892 bp proximal
Tssr20863	transcription start site region 20863	877 bp upstream
Tssr20864	transcription start site region 20864	923 bp upstream
Tssr20865	transcription start site region 20865	1695 bp upstream
Tssr20866	transcription start site region 20866	1710 bp upstream