rs27353221 SNP Detail

Summary

• ID
  rs27353221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150699596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCCTCAC AGCACCTTCT
  ACCTGTCCAA ACCTTGCCTG CTGTCTCACA GCATCAAGCC AGCCTTCCAA GTCTCGAGCT
  CGCAAACACA CAAGGGCCAG ACTCACTCTG TAAGTCAGCC TTGCCAAAGA TCTGGGGAGG
  AGTCTTCAAC CCATCCCAGC ATTGACCACA GCCATTTTTA ATGCCTCCCA CACTCCTTTG
  Y
  CTCATCTTAG GTATAAAAAT GTTTTTTAAA AAAAGGTTAT TTTTACTAAA CACACCAGGA
  ACCCTTCTTC TGCCTCATAG CACAGTACTT CTTCACTTTT TCCTCTCTTA CCCAGCAAAC
  AGCTTTGGAA CCACACAGGG TCCATCTAAC TCAAGGCCTA AAACTGTTTT ATAAACAGCA
  CACAATTCCA CAAAAATCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37567641	NES08917140	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27353221					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37567641	NES08917140	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150699596 () rs orientation: forward

Symbol	Name	Function Class
Abhd12	abhydrolase domain containing 12	within coordinates
Rr59012	regulatory region 59012	805 bp proximal
Tssr26719	transcription start site region 26719	1975 bp upstream
Tssr26720	transcription start site region 26720	1956 bp upstream
Tssr26721	transcription start site region 26721	1902 bp upstream
Tssr26722	transcription start site region 26722	1828 bp upstream
Tssr26723	transcription start site region 26723	1730 bp upstream
Tssr26724	transcription start site region 26724	1646 bp upstream
Tssr26725	transcription start site region 26725	1606 bp upstream
Tssr26726	transcription start site region 26726	1547 bp upstream
Tssr26727	transcription start site region 26727	1515 bp upstream
Tssr26728	transcription start site region 26728	1151 bp downstream
Tssr26729	transcription start site region 26729	1197 bp downstream