rs27353223 SNP Detail

Summary

• ID
  rs27353223
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150699509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTTCTACC TGTCCAAACC TTGCCTGCTG TCTCACAGCA
  TCAAGCCAGC CTTCCAAGTC TCGAGCTCGC AAACACACAA GGGCCAGACT CACTCTGTAA
  R
  TCAGCCTTGC CAAAGATCTG GGGAGGAGTC TTCAACCCAT CCCAGCATTG ACCACAGCCA
  TTTTTAATGC CTCCCACACT CCTTTGCCTC ATCTTAGGTA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37567643	NES08917137	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27353223					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37567643	NES08917137	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150699509 () rs orientation: forward

Symbol	Name	Function Class
Abhd12	abhydrolase domain containing 12	within coordinates
Rr59012	regulatory region 59012	892 bp proximal
Tssr26719	transcription start site region 26719	1888 bp upstream
Tssr26720	transcription start site region 26720	1869 bp upstream
Tssr26721	transcription start site region 26721	1815 bp upstream
Tssr26722	transcription start site region 26722	1741 bp upstream
Tssr26723	transcription start site region 26723	1643 bp upstream
Tssr26724	transcription start site region 26724	1559 bp upstream
Tssr26725	transcription start site region 26725	1519 bp upstream
Tssr26726	transcription start site region 26726	1460 bp upstream
Tssr26727	transcription start site region 26727	1428 bp upstream
Tssr26728	transcription start site region 26728	1238 bp downstream
Tssr26729	transcription start site region 26729	1284 bp downstream