rs27353225 SNP Detail

Summary

• ID
  rs27353225
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150699411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTTACT AGTTTAAAGA
  ATAGAAATTC CTTGTTAGTA TCTGTCAACT TTCTGTAACT AAGTCTATTA CAGACTGAAC
  ACCCCAAGTG TGTAAAACCA GATCCTACGA AGCCTTGAAC TAAGTTCTGA AGCCTGAGAC
  ATGCCTCCCA GCTGCCTGTG TCTTGGCTCT ACTCTCACAT GAGCTGGGCC CTCACAGCAC
  Y
  TTCTACCTGT CCAAACCTTG CCTGCTGTCT CACAGCATCA AGCCAGCCTT CCAAGTCTCG
  AGCTCGCAAA CACACAAGGG CCAGACTCAC TCTGTAAGTC AGCCTTGCCA AAGATCTGGG
  GAGGAGTCTT CAACCCATCC CAGCATTGAC CACAGCCATT TTTAATGCCT CCCACACTCC
  TTTGCCTCAT CTTAGGTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37567645	NES08917134	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27353225					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37567645	NES08917134	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150699411 () rs orientation: forward

Symbol	Name	Function Class
Abhd12	abhydrolase domain containing 12	within coordinates
Rr59012	regulatory region 59012	990 bp proximal
Tssr26719	transcription start site region 26719	1790 bp upstream
Tssr26720	transcription start site region 26720	1771 bp upstream
Tssr26721	transcription start site region 26721	1717 bp upstream
Tssr26722	transcription start site region 26722	1643 bp upstream
Tssr26723	transcription start site region 26723	1545 bp upstream
Tssr26724	transcription start site region 26724	1461 bp upstream
Tssr26725	transcription start site region 26725	1421 bp upstream
Tssr26726	transcription start site region 26726	1362 bp upstream
Tssr26727	transcription start site region 26727	1330 bp upstream
Tssr26728	transcription start site region 26728	1336 bp downstream
Tssr26729	transcription start site region 26729	1382 bp downstream