rs27353227 SNP Detail

Summary

• ID
  rs27353227
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150699194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCTTGCA AATCCCAGCT
  TCTTGTCTGT ACTTTCTTTA AGGGGACACT AAATCTGAAA AACAACACTG CCTTGTTTTT
  TTTTGTATGA TTTTGTTTCT TCTTAAGTTT ATTCCTTACA AGTTACCAAA CTTAGAGATC
  ATAAATTCCT AGAGGTTTGA GAACCTTCTA CTCGAAAAAC TAAAATACCT CCTAATATAC
  M
  ACATATGTAT TCCTGTTTCC CTTACTAGTT TAAAGAATAG AAATTCCTTG TTAGTATCTG
  TCAACTTTCT GTAACTAAGT CTATTACAGA CTGAACACCC CAAGTGTGTA AAACCAGATC
  CTACGAAGCC TTGAACTAAG TTCTGAAGCC TGAGACATGC CTCCCAGCTG CCTGTGTCTT
  GGCTCTACTC TCACATGAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	NZW/LacJ	PWD/PhJ
ss37567647	NES08917132	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	NZW/LacJ	PWD/PhJ
rs27353227					SNP	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37567647	NES08917132	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150699194 () rs orientation: forward

Symbol	Name	Function Class
Abhd12	abhydrolase domain containing 12	within coordinates
Rr59011	regulatory region 59011	1994 bp distal
Rr59012	regulatory region 59012	1207 bp proximal
Tssr26719	transcription start site region 26719	1573 bp upstream
Tssr26720	transcription start site region 26720	1554 bp upstream
Tssr26721	transcription start site region 26721	1500 bp upstream
Tssr26722	transcription start site region 26722	1426 bp upstream
Tssr26723	transcription start site region 26723	1328 bp upstream
Tssr26724	transcription start site region 26724	1244 bp upstream
Tssr26725	transcription start site region 26725	1204 bp upstream
Tssr26726	transcription start site region 26726	1145 bp upstream
Tssr26727	transcription start site region 26727	1113 bp upstream
Tssr26728	transcription start site region 26728	1553 bp downstream
Tssr26729	transcription start site region 26729	1599 bp downstream