rs27353229 SNP Detail

Summary

• ID
  rs27353229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150698360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTGAGCC CGGGATCAGC
  CTGTCTCCAC TACTCAGCAC CAGGGTTACA GTGCCACCAC ACAGCTTTTT ATGTGGGTGC
  TAGGGATCCA ATTTTAGATC CTTATTCTTG AGCACCAAGC ACTTTATCCA CTGAACCTCC
  TCCCTAGCTC AAGTAATTTA AAAACAAAAC AACCCAGAAA CCCAGAGACA GATTTTTATC
  Y
  TATCATCCCT TCAGAAACAC TGCCCAGGGA AGGGGTTCAC TGCTACAGTG CTCATGCAGC
  AGGCGAGACC CTGGGTTTAA GTCCGACTAC TTCAAAATCA ATACAACCCC AAACCAAGCC
  TGCACCAGAG CCATCTCTTT TTTTAAAGAT TTATTTATTT TATGTACATG AGTACACCGT
  ACCTGTCTTC AGACACCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37567649	NES08917158	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27353229					SNP	T	T	T	T	T	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37567649	NES08917158	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150698360 () rs orientation: forward

Symbol	Name	Function Class
Abhd12	abhydrolase domain containing 12	within coordinates
Rr59011	regulatory region 59011	1160 bp distal
Tssr26719	transcription start site region 26719	739 bp upstream
Tssr26720	transcription start site region 26720	720 bp upstream
Tssr26721	transcription start site region 26721	666 bp upstream
Tssr26722	transcription start site region 26722	592 bp upstream
Tssr26723	transcription start site region 26723	494 bp upstream
Tssr26724	transcription start site region 26724	410 bp upstream
Tssr26725	transcription start site region 26725	370 bp upstream
Tssr26726	transcription start site region 26726	311 bp upstream
Tssr26727	transcription start site region 26727	279 bp upstream