rs27353230 SNP Detail

Summary

• ID
  rs27353230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150696815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAACTCC TTTTTTTTTC
  TTTCTAAGAA ACTGCATCTA AAGGAGGATA ATGCCTTAAA GCAGAGTTTT CTTGTAAAAC
  TTATCATACT GTACATTTAT TTTCAGATAA ATTTGCTATA AACTCATGAC TATATTAACC
  CTGTCCTGAG CCCTAAAGGT TGTCAGGATG GGCAGCACAA GTCCCGAGTC CCATCTGTAA
  R
  ATAAAAGAAC AGAGCTTGTA CGTACACAGA CTTTTCTGGC CTGAGATAAA ATCCCAGCCC
  CAAAGCCTCT ACCGCTTTCC AGTCCAAAGG GCAGCTTGGC ACACACAACA AAGGGCAGCT
  CGGCACACAC AACAAAGGGC AGCTCGGCAC ACACAAAGGT GGTCACAGAT AGCTCGGCAA
  GCTCTGAGCC ATTCTGCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37567650	NES08917225	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27353230					SNP	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37567650	NES08917225	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150696815 () rs orientation: forward

Symbol	Name	Function Class
Abhd12	abhydrolase domain containing 12	within coordinates
Rr59011	regulatory region 59011	within coordinates
Tssr26719	transcription start site region 26719	754 bp downstream
Tssr26720	transcription start site region 26720	811 bp downstream
Tssr26721	transcription start site region 26721	833 bp downstream
Tssr26722	transcription start site region 26722	933 bp downstream
Tssr26723	transcription start site region 26723	1023 bp downstream
Tssr26724	transcription start site region 26724	1104 bp downstream
Tssr26725	transcription start site region 26725	1153 bp downstream
Tssr26726	transcription start site region 26726	1212 bp downstream
Tssr26727	transcription start site region 26727	1250 bp downstream