rs27353232 SNP Detail

Summary

• ID
  rs27353232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150696379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAGAGGC TTCTATGGGA
  GATAAAGAGG TAAGAATGAA CATTATGAGG GGTTTAACAA GGACTGCTCA GGGAAGAATG
  AAGGAGGCTA GTGTTTAATA GAGCTAAACC ATTTTCCAAG AAAGTTTGAG TTTCTCTCCT
  GTCTCTGCCA CTGAACCAAG ACTTTCCTTT TGCTAGGAGA CATGTTCCTA ACCCTTGAGA
  Y
  AGGACAGCAA AGGGACAGGT GGAGGCACAC TCTACCCCTT CAGATGCCAG GCATCGCTCA
  AACAGCACTA AGATGGAATT AGATGTGGGA AGGAATATCA GGACCCAAGA AGCATGCTCC
  TATGAACAGG TATATACAAA ACAGACAATA AACTACAATA TTAACAACGT TTCTCAAGGG
  ATTCTCATTG TTACTTATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37567652	NES08917223	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27353232					SNP	T	T	T	T	T	T	C	T	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37567652	NES08917223	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150696379 () rs orientation: forward

Symbol	Name	Function Class
Abhd12	abhydrolase domain containing 12	within coordinates
Gm75588	predicted gene, 75588	1733 bp downstream
Rr52274	regulatory region 52274	1817 bp distal
Rr59011	regulatory region 59011	426 bp proximal
Tssr26719	transcription start site region 26719	1190 bp downstream
Tssr26720	transcription start site region 26720	1247 bp downstream
Tssr26721	transcription start site region 26721	1269 bp downstream
Tssr26722	transcription start site region 26722	1369 bp downstream
Tssr26723	transcription start site region 26723	1459 bp downstream
Tssr26724	transcription start site region 26724	1540 bp downstream
Tssr26725	transcription start site region 26725	1589 bp downstream
Tssr26726	transcription start site region 26726	1648 bp downstream
Tssr26727	transcription start site region 26727	1686 bp downstream